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Hi, do you have any experience with running proteomics data in Cellchat? Can I just replace RNA expression values with MS-derived protein quantifications, given the correct gene identifiers are presen…
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Quantitative Behavior of Mass Spectrometers
To apply the theory we learnt in the last chapters of this unit to quantitative analyses with mass spectrometers, we need to think about the limitations th…
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I am using this in the command line using the debian package of diann to process my samples.
/usr/diann/1.8.1# ./diann-1.8.1 --f "/home/19012024_PE_10min.raw" --f "/home/19012024_PE_30min.raw" --f …
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When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
```
Targeted 3…
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@MihaiSurdeanu
I ask because since we're grounding... and some ont nodes have a sense of polarity baked in (i.e. food insecurity vs food security).
and/or we can exclude inc/dec triggers from t…
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### Description of the bug
I get the following error when running quant.ms using an sdrf.tsv file:
Error in setnames(x, value) :
Can't assign 4 names to a 0 column data.table
Calls: OpenM…
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@Mindyporterfield beyond the work of the students the outreach coordinator will also create some material. the list of ideas collected for the student projects can be a start.
> use-cases that can …
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MBR attempts to map identifications from one run onto peaks in another run. This is incompatible with the multiprotease search because it does not make sense to map IDs from one protease onto another …
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Hello,
Thank you for your great work!
I have been using the software to analyze the DIA data. But I'm confused about the identifiactions of the two different wersions (DIA-NN(1.7.12) vs DIA-NN(1…
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If a peptide can be mapped to multiple proteins, the 1.0 specs recommend duplicating the rows, and just changing the accession. I have a strong preference to change this so that multiple accessions ca…