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I have a problem that the wwPDB deposition server and also the wwPDB validation server misidentifies my polymer chains as polyribonucleotide instead of polypeptide(L) when I upload the refined.mmcif f…
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Hi. First: great idea :) I've noticed a bunch of people I follow on twitter bumping this up... I wasn't confident enough to contribute in the first iteration years ago, but now I do wanna do stuff 🔥So…
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## 論文リンク
https://www.nature.com/articles/s41586-021-03819-2
(Supplementary Information も同ページにリンクがある)
## 公開日（yyyy/mm/dd）
2021/07/15
## 概要
タンパク質の構造予測コンペである CASP14 において他チームを圧倒した精度を達成した AlphaFol…
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I commented the line of code where I found the error, I am very interested in your paper and trying to use it in my job. I have some question with this code. I commented the line of code where I found…
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I am trying to figure out how Evodock works.
Could be that I am mistaken and didnt get the real pourpose of the tool. I am trying to use:
> Local assembly - Predicting assembly structure from mu…
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I will likely not implement it in #41 where I planned to because the PR is already enormous. So I write it down here.
We need to support secondary structures for cyclic proteins. Some thought were …
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What a great job! Only the SDF files of small molecules are output in the "results/user_predictions_small" folder when I infer with the example code：
`python -m inference --protein_ligand_csv data/…
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Hi @bcov77,
I'd like to kindly ask your insight in complex docking task I'd like to achieve.
I have predicted an RNA structure (e.g. nstruct=50) from sequence (~80b) w/ and w/o specifying the R…
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The isoform2canonical mapper from Preethi is not using any API to retrieve the sequence for isoforms or canonical proteins but rather should come with his own sequence data basis (not database, I actu…
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A FileNotFoundError: [Errno 2] No such file or directory: error occurs. This error appears when inputting long sequences or complex structures into the contigs. When generating proteins with simple st…