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While I was reviewing the code, I noticed that the contact_map seems to be a requisite for the input data of model. Does this imply that if I only have the sequence of a protein but not its actual thr…
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# My error
## Generate the ESM2 embeddings for the proteins:
```python
python datasets/esm_embedding_preparation.py
```
I downloaded the BindingMOAD dataset and extracted it into the "/data/Bin…
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@milot-mirdita @martin-steinegger
Hi, thank you for developing such an amazing tool. I had some problems using foldseek.
1、I often cluster protein structure datasets using the following command…
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```
TypeError: Cannot read properties of undefined (reading 'conformation')
```
at ` operator_key: p2((l) => l.unit.conformation.operator.key),`
This happens when I am trying to do
```
…
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https://doi.org/10.1101/137828
> Understanding the relationship between protein structure and function is a fundamental problem in protein science. Given a protein of unknown function, fast identif…
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Several scientists from UCL team (Hadia Almahli) and DLS team (Jasmin Aschenbrenner and Daren Fearron) carried out multiple curations for the various sets of merged compounds (1500 compounds) propose …
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I'm trying to predict the protein structure of an antibody using AlphaFold, but I'm unsure how to specify the disulfide (SS) bonds to AlphaFold. While I can see the disulfide bonds in the Uniprot feat…
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- Convincing active hits against SARS-CoV-2 helicase remain elusive despite attempts from many groups and organisations.
- Zhou et al. (2024) https://doi.org/10.1038/s41557-024-01442-y published …
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Hi, when dealing with a protein structure with several chains, how does `Protein` class handle that? Does it connect all chains eg. a concatenated residue types list?
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Hi everyone!
I’m using the arrow command **arrow annotations load_gff3** to load a full GFF3 into an annotation track, but nothing's happening.
**The version of my plugin:**
apollo 4.2.13
**…