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Hello,
I'm trying to use `modkit adjust-mods` on a bam file. This bam includes supplementary mapping and optical duplicates reads.
It seems like the `adjust-mods` skip those reads.
Is there an op…
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### Did you check docs and existing issues?
- [X] I have read all the which-key.nvim docs
- [X] I have updated the plugin to the latest version before submitting this issue
- [X] I have searched the …
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On the Nexys A7, @luispimo realized that the `jtag_trst_ni` is connected to switch 0, so than reset is active by default.
https://github.com/esl-epfl/x-heep/blob/2c6d7d8f581020d4961bd08dbd3956c90b67…
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Hello,
I've been mapping paired end reads to a graph built with minigraph-cactus
```
vg giraffe --progress --fragment-mean $frag_mean --fragment-stdev $frag_stdev -Z ${inDir}/arenosa_pg.d2.gbz …
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Hi
First off, thanks to all the developers who work on `pysam`. It's extremely useful.
I noticed a bug when running the `pileup()` method: when I set the parameter `min_mapping_quality` to a …
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Hi @maickrau,
I'm trying to map Nanopore R10 and Hifi reads to the HPRC graph and its super slow- I'm mapping 1 million reads on 64 threads and it still hasn't finished after 20 hours. Is this what…
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Hi,
For our application, we wish to map NGS RNAseq (Illumina PE) to long error prone Nanopore genomic reads. Could you please suggest some settings that we could adapt to make STAR capture these mapp…
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this is the error i get in the log file i don't have any understanding of these kind of error's
**System.Exception: Failed to read HID device report
at FestivalInstrumentMapper.MapperThread.Re…
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Currently, the sources and the selectors used are hard-coded. An improvement is to read a CSV file with the `source`, `selector` values in it.
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I have a question that is likely a little outside of your scope for help. So, if there is another resource I should consult, could you please point me in that direction?
I used metawrap to bin ass…