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I am trying to generate perfect reads from a single genome .FASTA file, and whenever I do, the package attempts to generate the reads but kicks me back to the help menu. I am able to generate reads wi…
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I believe the only way to achieve linearizable reads at the moment is for the app logic to create a phantom write to the kv to ensure that the primary replicates and reaches consensus on the associate…
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Hey guys, thanks for the software.
I was following the tutorial for mapping long reads and calling SV.
All good for the first part, but I noticed that when I was launching the vg pack using the .gbz…
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Would it be useful to be able to specify your reads in text files? This would be in addition to the current thing where you can do a directory or a glob.
This could be useful if you have a whole to…
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Dear dev team,
I realize the recorded current in the bulk file is immutable during playback when performing adaptive sampling on it with Readfish. Although no actual enrichment can be achieved, I a…
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Hi @benjjneb
I've been using your wonderful dada2 pipeline for years now but I encountered the below error yesterday for the first time. I'm pasting the relevant subsection of the log below. The 1…
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From the raw reads, I need to remove:
- [x] adapter sequences
- [x] phix sequences
- [ ] Find a way to remove insect/host DNA.
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Hi, it is my first time to use Modkit to extract modified base signals but have some problems.
I use Dorado v0.7.1 to do SUP + modification calling (m6A,pseU).
I use minimap2 to align the unaligne…
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Have run the test packaged with the software successfully. But when I try to run my own data, I get the following error:
python create_inference_graphs.py --reads All+RatQ3.fastq --gfa raven-unpoli…
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Airyland on Discord reports that:
> Appears that the embedded replica's .sync function is blocking SQL queries. Is there a way to allow queries to execute concurrently with the sync process?
SQL…