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Issue 17 from gitlab
Add some analysis/utils.py code to write out starfiles with relion-compatible format(s). Identify the useful formats and whether .stars need to be written from scratch, or copied…
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Example command:
`csparc2star.py 0_exposures_accepted.cs J198_passthrough_exposures_accepted.cs out.star`
Example output:
Is this expected? For use in relion, it would be useful to have t…
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Dear Developers,
Any insights into how to fix this type of Refine3D crash would be most helpful!
Many thanks,
Kacper
**ERROR DESCRIPTION:**
Any attempt to resume Refine3D from an optimi…
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Examples: load annotations to the images from relion, PROOF
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Hello! I was wondering what the angel convention is when saving the 'protein locations'?
Also I was wondering if it would be possible to to add functionality to convert the membrane fits to oversa…
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Hi
I am trying to do the 3D auto-refine with relion 5 and having following issue. I saw a similar issue with relion 3 but I am not sure if we can solve this using same method for relion 5.
Th…
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Hi, specialist. I was trying to run THUNDER on our cpu cluster, which contains 15 nodes and each node has 20 cores. we use PBS as our Job scheduling system. The submitted job works fine with other pr…
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Hi,
I just finished my first cryodrgn run on a ribosome dataset and I was wondering if it is possible to restrict the region of interest using subtracted particles (e. g. from Relion) instead of fu…
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Hello,
I am trying to pick filament with topaz in relion4.0. I have installed the 3dem version topaz from the webpage https://github.com/3dem/topaz. I have created a topaz environment and running r…
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Relion 5
Job type - PickTomo
Key global throws error in pandas. Appears to be coming from:
│ 26 │ star = starfile.read(tilt_series_star_file) │
│ ❱ 27 │ global_ta…