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ccpem
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roodmus
GNU General Public License v3.0
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Updated README with license
#39
JatGreer
closed
2 months ago
0
Analysis scripts for bioarxiv
#38
JatGreer
closed
2 months ago
0
Sort out het_metrics.log file
#37
JatGreer
opened
3 months ago
0
Jgreer/docs
#36
JatGreer
closed
2 months ago
0
Setup sphinx docs
#35
JatGreer
opened
4 months ago
2
Update Parakeet to latest tagged version
#34
JatGreer
opened
4 months ago
0
integration test for heterogeneity module
#33
MJoosten
opened
4 months ago
0
Pytest fails in comparing dataframes
#32
MJoosten
closed
4 months ago
1
plot_ctf incorrect CTF
#31
MJoosten
opened
4 months ago
0
Update pyproject.toml for working mdtraj+MDAnalysis versions
#30
JatGreer
closed
4 months ago
1
Add parallelisation for simulate utility
#29
JatGreer
opened
4 months ago
0
Roodmus v0.3.0 utilities
#28
JatGreer
opened
4 months ago
0
Identify Parakeet config parameters which are not useful for SPA dataset generation
#27
JatGreer
opened
4 months ago
1
Parameters for noisy, radiation damaged, inelastic scattering-inclusive, fractionated dataset generation
#26
JatGreer
opened
4 months ago
0
power spectra in synthetic data
#25
JatGreer
opened
4 months ago
0
dose fractionation and beam induced motion
#24
JatGreer
opened
4 months ago
0
inelastic scattering models
#23
JatGreer
opened
4 months ago
0
MTF generation and e-/A^2/second dependence in implementation (also relation to DQE)
#22
JatGreer
opened
4 months ago
0
CTF simulation
#21
JatGreer
opened
4 months ago
0
Beam damage model and implementation
#20
JatGreer
opened
4 months ago
0
Generation of the simulated Gaussian random field (GRF) ice model
#19
JatGreer
opened
4 months ago
0
pandas compatibility
#18
MJoosten
opened
6 months ago
1
Add analysis tests for per-particle defoci and 1-to-1 matching labelling
#17
JatGreer
opened
7 months ago
0
Refactor num_ugraphs to be implemented within analysis object. This resolves unnecessary matching of particles in all ugraphs in a metadata file.
#16
JatGreer
opened
7 months ago
0
add .cff file (for easy citation) with doi to repo
#15
JatGreer
opened
7 months ago
0
add CONTRIBUTING.md to repo
#14
JatGreer
opened
7 months ago
0
Inconsistent naming convention of analysis outputs (basename of metafile)
#13
JatGreer
opened
7 months ago
0
Update plot formatting
#12
JatGreer
opened
7 months ago
1
Look into cisTEM for micrograph simulation
#11
JatGreer
opened
7 months ago
1
Add progressbar in conformations_sampling functionality
#10
JatGreer
closed
4 months ago
1
Add support for loading latent coordinates into particle picking dataframe
#9
JatGreer
closed
4 months ago
1
check Thon rings with empty micrographs
#8
JatGreer
closed
4 months ago
4
Particle distribution in micrographs
#7
JatGreer
opened
7 months ago
0
determine particle radius script
#6
JatGreer
opened
7 months ago
0
evaluate whether to use git submodule for pipeliner/parakeet
#5
JatGreer
opened
7 months ago
3
Starfile writing via gemmi/ccpem-pipeliner
#4
JatGreer
opened
7 months ago
4
Check nw, snapshot iteration in plot_waymarking (waymarking.py)
#3
JatGreer
closed
3 months ago
2
Add utility to allow user choice of whether to do in-plane rotation
#2
JatGreer
opened
7 months ago
4
Test conformation sampling using waymarking without limiting to only the 1st .dcd file
#1
JatGreer
closed
3 months ago
1