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Dear developers,
I came across this situation, and I'm not absolutely certain it is an issue with pdb2pqr, but I thought it would be nice to inform.
It happened when preparing a protein (pdb id:…
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Hi,
I'm getting an error when trying to blastn sequences vs NT DB. I also tried to just run the last convertalis command on a different computer and saw it crashed after getting to ~2TB of RAM usag…
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there are hundreds of monomer i shall run, but i don't wanna copy-paste pdb. one by one for similarity protein structure, Is there is a better ways that can resolve my problem?
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Hi,
I am trying to visualize the electrostatic surface of several different kinds of molecules and some of them either contain polysaccharides (for example the protein MUC2, which is often O-glycosyl…
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Hi AlphaLink developers!
I am trying to use AlphaLink. I've downloaded the model via your dropbox link and unpacked it with gunzip. So I start the prediction like this:
```
python predict_with_c…
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## Expected Behavior
No errors reported
## Current Behavior
when I run foldseek easy-search I get the error mentioned in the title. Although it is apparently working well. Here I'm pasting a fracti…
ocstx updated
3 months ago
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The web site has successfully translated all the NP_xxxxxx identifiers into the proper yeast aliases (Abc1 etc). A user will find the alias name, but then fail to find that easily in the downloaded fi…
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### Current Behavior
…
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If something bad happens on the server it can lead to the following exceptions:
```
Caused by: java.io.IOException: Stream closed
at com.vaadin.addon.charts.util.SVGGenerator.generate(SVGGenerat…
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[GROMACS tutorial](http://www.mdtutorials.com/gmx/complex/01_pdb2gmx.html )
[GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design](https://doi.org/10.1021/acs.jcim.2c0004…