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Hello!
I'm having a slight issue with the annotations generated by EGAPx. When I translate the CDS into a protein sequence, I'm seeing a lot of premature stop codons. This is a species where I am s…
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Hi,
I wonder where I can access the fasta files of the genomes for the RNA-viruses within Serratus.
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Requests to the mapping API now return the error `Error in fetching metadata`. The same queries work if the IDs are passed with the `query` parameter (space separated list) rather than as a file, whic…
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Hi!
I am trying to annotate a mammalian genome about 2.7Gb in size, I used BRAKER, GeneMarkS-T and TSEBRA "long_reads" branch. I want to use this to play the role of Iso-seq data. The configuration …
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hi all
I ran monocle3 passing a Seurat object following the instructions here (https://satijalab.org/signac/articles/monocle.html).
then I wanted to run the DEG analysis but the returned data.f…
SBata updated
2 years ago
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Hello, I have problem to understand properly the scale of the pseudotime heatmap going from 2 to -2,
after selecting genes with a menlogFC >=1 and p.adj
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Dear GuangChuang:
I have two bacteria organisms.
Klebsiella pneumoniae Kp-1 (https://www.ncbi.nlm.nih.gov/nuccore/CP012883.1) and Pseudomans protegens Pf-5 (https://www.ncbi.nlm.nih.gov/nuccore/CP00…
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I submitted Bakta annotations to NCBI this week and over half had some fatal errors. They weren't hard to fix, but I wanted to let you know in case there's something that can be done with a future upd…
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Hello Scissor,
I'm running Scissor, but no matter what alpha I used, it always came out 0 selected cells.
Could you please help me with this issue?
Thanks!
Best,
Yuanjian
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