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Hello,
Recently we have been using hybpiper to assemble thousands of BUSCO single-copy genes from metagenomic reads (2x150bp). The target file is amino acids, and we set the coverage cutoff for spa…
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Creating this thread to post potentially useful info about _Pichia pastoris_/_Komagataella phaffii_ that people come across.
Quick background: _Pichia pastoris_ (now named _Komagataella phaffii_) i…
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**Description**
**Sub-lineage of:** KP.3
**Earliest sequence:** 2024-3-9, Tasmania — EPI_ISL_19140364
**Most recent sequence:** 2024-6-16, Canada, Alberta — EPI_ISL_19222338
**Continents circulati…
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Hi Oliver,
I hope you do well,
Here, it is just an inquiry about the equation of coding density.
The background of the questions, I am comparing two sister species (the first is a successfu…
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Hello,
I am using TRUST4 on my spatial-RNAseq data, which has 20bp barcode. However, I am not clear, how TRUST4 handels the single-base error within these 20bp-barcode? In other words, when two bar…
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### **Description** Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1594
**Sub-lineage of:** KP.2.3 (= JN.1 + S:∆S31, S:H146Q, S:R346T, F456L, V1104L + ORF3a:K67N + O…
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Link to curation session
http://canto.phi-base.org/curs/bd02fdb6831712ca
Stagonospora nodorum is a necrotrophic fungal pathogen producing host selective toxins/necrotrophic effectors.
In virule…
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Dear authors,
I have a question regarding the detection of methylations. I am not quite sure how it detects gold methylations, i.e. is it based on already existing methylation patterns (motifs) an…
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