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Hi @sokratiag
I tried following the installation instructions in a clean conda environment but ran into compatibility issues with both default and paper-specific dependency lists. I am looking for…
vitkl updated
4 months ago
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1. A comparison of automatic **cell identification** methods for single-cell RNA sequencing data
Article Link: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1795-z
2. Challen…
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Hello,
I am trying to identify time-dependent genes using the time series RNA-seq data with only one sample per each time point (there are about 20 time points which are not equally spaced), and wo…
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翻译任务 [simpleSingleCell:A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor](https://www.bioconductor.org/help/workflows/simpleSingleCell/) (R package version 1…
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Hello
Could you inform me if the raw RNA seq data used in this analysis are publicly available for download somewhere?
Thanks,
Guillaume
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- Introduction to RegTools functionality. After HISAT2 alignment, QoRTs (written in Scala) performs QC but also processes RNA-seq data to produce count files needed for splicing analysis by DEXSeq and…
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I've searched for a while, but all I find is very old threads with many confused people, so I figured I will ask here.
Apparently, bowtie2 and bwa do not report NH tag, which supposed to label how …
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Hello,
I read your R script about single cell RNA-seq analysis workflow.But I can't find the code about diffusionmap and monocle trajectory analysis.I'm interested in it.Can you share it on github?