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We have examples where there is an amplicon with two right-hand primers. Neither primer is excluded at the primer/amplicon identification stage, and both are provided to cylon.
Observed behaviour: …
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I've heard a few folks ask about aerosols in the last couple months. I think our choice so far has basically been to disregard it as a feature or offer people workarounds as 1-1 advice.
Ran across…
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Title: The proximal origin of SARS-CoV-2
### Please paste a link to the paper or a citation here:
https://www.nature.com/articles/s41591-020-0820-9
### What is the paper's [DOI](https://l…
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## Tasks
_@victorlin to fill this out_
## Links
- [2021-08-17 take 1](https://github.com/nextstrain/augur/pull/762)
- [2021-08-23 take 2 (moved to ncov)](https://github.com/nextstrain/ncov/p…
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Hello V-pipe Team,
I am from the University Hospital Essen, Germany, and we work extensively with SARS-CoV-2 in our research. We have also developed a [SARS-CoV-2 workflow](https://github.com/IKIM-…
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The existing [SARS-CoV-2 variant analysis] tutorial is focused on the analysis of metagenomic sequencing data. The majority of data being produced, however, uses the ARTIC amplicon protocol (for Illum…
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In the function section of the protein pages, the HAMAP link (e.g. "MF_04099" in the image below) is not working
https://www.glygen.org/protein/P0DTC2-1#Function
 re-factor the nextclade json parser script to accomodate the new json format.
2) update the wdl to a…
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# Story Review: Using wastewater data to monitor SARS-CoV-2 in England
**Story Name:** Using wastewater data to monitor SARS-CoV-2 in England
**Submitting Author:** @AoifeHughes (Aoife Hughe…
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As I was experimenting with the repository, I stumbled upon some interesting behaviour which I thought might be useful to document.
I was running the model as described in the README (with a minor …
tskir updated
10 months ago