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Hello,
I'm trying to run this on my scATAC-seq sample and I'm running into this issue:
```TypeError: Readanno() got an unexpected keyword argument 'genome'``
I built the hg38 index using the same…
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Hi there,
Thanks for a great tool!
Can I use this tool to predict the data of scATAC?
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hi guys,
I opened an issue a while back regarding some problems with installation #6 and a PR #7. I even tried Dockerizing it all. But that was not possible due to the balancing act of supporting p…
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Hello!
This might be an unusual request, but I have been attempting to use Salmon Alevin for mapping of **scATAC-seq data** (10X Genomics platform) and have a few questions on how to best do this (/w…
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I noticed that when I used the subsetArchRProject function, there was a problem about `file.exists`. The following is the detailed related content:
**Describe the bug/Browse code information**
`…
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I have reviewed the tutorial to integrate scRNA-seq and scATAC-seq data (https://satijalab.org/seurat/articles/seurat5_atacseq_integration_vignette). If I have multiple conditions, do I integrate all …
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Hi,
Thank you for providing this nice tool! I'm using STREAM for my scATAC-Seq analysis and it works quite well using the k-mer mode. I've also calculated the gene activity score using Cicero. Can y…
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Hi,Yijia.Thank you for the tool you developed. It is a necessary and practical method for cell type definition. Now when I use the BCC_sample sample for testing, I run the following code
`query_KNN …
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There is currently a lack of readily available tools for the presentation of spatial datasets. I would very much like to see a release of this tool that allows you to visualize spatial data either sep…
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* [x] ~~https://coblet2022.bezmialem.edu.tr/order-of-presentations~~
* [x] ~~@gallardoalba talk about Genome assembly~~
* [ ] Bjoern in Brüssel EOSC mail from "Horizon Europe projects coordination m…