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### Task motivation
Spatial decomposition (also often referred to as Spatial deconvolution) is applicable to spatial transcriptomics data where the transcription profile of each capture location (spo…
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This is a list of tutorials that are missing a workflow, if anybody would like to run this tutorial and extract the workflow from their history afterwards and upload it here, this would be a great hel…
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Dear developers,
First off, I'd like to express my appreciation for the development of this method.
I'm interested in using TPM normalized bulk references of sorted cell types. This includes bot…
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Hi,
I am using copykat to calculate CNV on a cancer sample, and results showed that not only cancer cells, but also there were a lot of macrophages with CNV.
Could macrophages have CNV in cancer sa…
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Hi,
I am willing to try your code for a 10x scRNA-Seq analysis. However, in the latest V2 chemistry, they changed the design of barcodes, R1 and R2 reads. In simple, R1 is 26 bp long, including th…
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thank you so much for creating this tool
quick question regarding utilization of cell chat with spatial data:
https://htmlpreview.github.io/?https://github.com/sqjin/CellChat/blob/master/tutor…
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Hello all,
Just wanted to let people know what tools I'm working on (or might work on in the future), in case anyone else is interested in these.
I'm concentrating on RNA-seq/ChIP-seq/ATAC-seq wo…
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Dear Omicverse Team,
I want to congratulate you on the outstanding work you've done with Omicverse!
I am writing to seek your assistance with an issue I encountered while trying to deconvolute b…
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Hello everyone,
We are interested in using SComatic to detect single-nucleotide mutations in single-cell data, for which we have tested the performance of the tool using scRNA-seq open data from tw…
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# tl;dr
- `salmon alevin` returns an error if the cell barcode length is > 31 base pairs
- This blocks me from using `salmon alevin` for a novel scRNA-seq chemistry that has a 34 base pair cell barc…