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Hi
i want to analyze some scATAC-seq data. And after unzip, i got 10 folders (1 patient per folder). In folder, there are 2 subfolders in whcih scRNAseq data and scATAC-seq data exist seperately. W…
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Hi I am trying to map the annotations of a reference scRNAseq dataset on to a new scRNAseq dataset.
Here is the pre processing of both the Reference and the Query datasets, which I integrate using …
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```
Warning messages:
1: Can't find iSEE in webR binary repository.
2: Can't find scater in webR binary repository.
3: Can't find scRNAseq in webR binary repository.
4: Can't find curl in webR bi…
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@songeric1107 Display not working for Mouse, scRNAseq,postnatal mouse utricle,raw matrix (Jan)
![image](https://user-images.githubusercontent.com/70719873/179007646-83dc1d3d-20f9-4e20-b523-855d1f5989…
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Hi
i want to analyze some scATAC-seq data. And after unzip, i got 10 folders (1 patient per folder). In folder, there are 2 subfolders in whcih scRNAseq data and scATAC-seq data exist seperately. W…
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I used cellSNP to identify SNP of scRNAseq. But I found a problem many SNP sites are not in gene. In my opinion, All Reads of scRNAseq should come from gene, So all SNP sites should locate in gene.
…
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Hi
i want to analyze some scATAC-seq data. And after unzip, i got 10 folders (1 patient per folder). In folder, there are 2 subfolders in whcih scRNAseq data and scATAC-seq data exist seperately. W…
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I was trying to get count matrix from 10x fastq files. I got this fatal error notification saying "**--soloUMIdedup=1MM_CR is not allowed for --soloType CB_UMI_Simple**".
Here are the parameters I a…
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Hello i came across your package and i think it's amazing!
I think it could fit nicely in our lab's standard toolbox. It fills the missing link between the scRNAseq raw data and our local instance of…
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Hi there,
I was trying to write my adata with `write_h5ad` which has my loom objects merged with my Seurat object in Python so that I can then convert it to Seurat object to use `SCP`, but it thre…