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Hello,
I was trying to use DAB-quant with .svs image files, but it doesn't seem to recognize this format even though .svs is under the list of formats recognized by Openslide. May you have any advice…
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```
============================================================= test session starts ==============================================================
platform linux -- Python 3.10.14, pytest-8.1.1, p…
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We encountered some troubles in the process of testing the GWAS-SVs pipeline with the GATK due to the lack of JSON files for module7. I wonder if you can share the JSON file in Module 7 (in developmen…
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Thank you again for the hard work on this.
There is a discrepancy between the colors of the images extracted and the optimal colors such as the one seen in Leica Imagescope. Are you able to incorpora…
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Hi there,
Reading the metaSV [paper](http://bioinformatics.oxfordjournals.org/content/early/2015/04/10/bioinformatics.btv204.full.pdf).
I am interested in how do you implement the "Merge overlapping …
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Please create a PYPI release with the new code.
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Hi,
I run AA (really nice tool, thank you!) and I was wondering if it's possible to get a bedpe file with the SVs calls, from point 2) of the algorithm ("SV detection: Detect copy number changes an…
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**Describe the bug**
caMicroscope viewer launches and fails to find TileSource for 5 seconds: in white in the background "Unable to open [object Object]: HTTP 404 attempting to load TileSource" and i…
2grep updated
3 weeks ago
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[Current](https://staging.kernelci.org:9000/viewer?search=parent%3D6679e066af336ef8c0147ce8) DT kselftest failures on latest linux-next:
- [ ] `/soc/i2c@11009000/trackpad@15`: Will be fixed by https:…
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See #126, but for SVs. This is in addition to filtering against gnomAD.