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An important part of the name usage matching, apart from plain name matching, is to compare the classification of matched candidates to disambiguate homonyms. As classifications can be very different …
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Thanks to XXX: " - - This solution does not resolve all duplicates in the strain level data, so in the profile-level phyloseq object taxa rownames are simply indexes ‘sp’ * This is an issue because so…
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### Description of feature
I can add a module to Amliseq that would run the LCA scripts from eDNAFlow. More information can be found here: https://github.com/mahsa-mousavi/eDNAFlow#lca-lowest-common-…
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| | |
| ---- | ---- |
| **Information Element Name** | Name |
| **Modified** | 2023/12/14 |
| **Label** | Name |
| **Definition** | A name given to the object. Any string of characters and/or …
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The ASFIS code list includes information on FAMILY and ORDER. This taxonomic information can be very useful for some analyses but it is not clear (to me) where the information comes from (which author…
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https://github.com/CatalogueOfLife/data/issues/560
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## High performance liquid chromatography (HPLC) phytoplankton pigment timeseries for the northern Salish Sea and central coast, British Columbia
## Best Practices Checklist
### In General
- [x] …
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One consequence of the fix implemented in #487 is that it makes individual taxonomic classifications at each level much longer than before (since now we're including ancestor information). See the exa…
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Hi guys! First of all thank you for doing this work. I think compiling and curating these databasets is really useful and would have been difficult. I have used this databases to do taxonomy assignat…
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* eggnog2gbk version:
* Python version:
* Operating System:
### Description
I am using M2M, and I am trying to make gbk files using emapper2gbk for ~1200 bacterial species for use as input in m2…