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Hi, thanks for your excellent tool!
I am wondering about the choice of plink. Should I use the same chr in step1 and step2&3 or just randomly choose in step1? Because I noticed that step1 used chr1 p…
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Hi
Any plans to expand snippy with support for pacbio and nanopore reads? Noticed this tutorial demonstrating the cool stuff snippy can do https://training.galaxyproject.org/training-material/topic…
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The analsysis variants cohort stats INFO (get) probably needs to be s/info/query/ as all the other `get` methods ends in query
GET /{apiVersion}/analysis/variant/cohort/stats/info
Also even the …
pamag updated
2 years ago
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My project currently has 17 flavor & 4 build type, that means 68 combination of build type & flavor task and additional task generated for each combination. I have managed to exclude flavor & build ty…
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Currently the dtype for Character columns is "S1", which leads to values being returned as ``bytes`` rather than ``str``:
```
dask.array
Dimensions without coordinates: variants, INFO_IC2_dim …
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Here, we can compute various results for a particular network sketch.
However, I'm not quite sure if this is the best course of action. These results would be invalid once the sketch changes, plus …
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Hello!
We are using version 1.1.0 of OMIM module in our analysis of the WGS data.
There is a problem that a very small percentage of variant in the sqlite file had a link to OMIM database. But du…
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Comparing
https://github.com/PacificBiosciences/trgt/blob/main/repeats/pathogenic_repeats.hg38.bed
to
https://github.com/broadinstitute/str-analysis/blob/main/str_analysis/variant_catalogs/varia…
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PyChess version 1.0.5 (official .deb downloaded from releases/), running on Debian 12 x86_64
Stockfish 16.1 configured as analysis engine.
Issue observed playing both as white and black side and a…
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Under certain high-stress scenarios, we can see these exceptions coming from the VariantStorageMetadataManager.
```
2020-01-09 12:25:07 [main] ERROR VariantFileIndexerOperationManager:279 - Error…