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Hi and thanks for this very useful package.
I've been testing it on some internal datasets using both WES and targeted data. I've had an issue with the targeted data which I'd like to report (very …
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### Description of feature
Hi,
It seems like the CNVkit workflow uses `cram_recalibrated` files as input here: https://github.com/nf-core/sarek/blob/bcd7bf9cb98cddec27bb54fb47ee122c09388c02/subworkf…
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chem opt = 301 and 13 not working past 30 min for some reason
try and work through chem code to understand why LES causes errors
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Following the docs shown on https://pypi.org/project/wes-service/, I just installed via 'pip install wes-service' into a python 3.6 virtual env. When I run 'wes-server' I get the error:
```
$ wes-…
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Create an ARCO version of SNODAS (data source: https://nsidc.org/data/g02158/versions/1) and store on the OSN pod (for the entire period of record available, for all of CONUS).
Nat-IWAAs has a copy f…
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Can wdl-ide support the GA4GH WES Backend as a Cromwell Backend for remotely execute WDL script from VS Code.
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### Description of the bug
Idk why, If I try to delete the two tools which report error, it will report for another problem
-- Check script '/root/.nextflow/assets/nf-core/sarek/main.nf' at line: 34…
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cwl-WES currently does not issue spec-compliant run logs (elixir-cloud-aai/cwl-WES/issues/128). Therefore, run log validation has currently been enabled. Once cwl-WES supports spec-compliant run logs,…
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How do you get back the results of a workflow passed to the DNAStack WES server. Can this be done through the WES API?
There are a couple of clues
The run log gives a working directory and the comm…
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## Problem
It is currently not possible to describe the shape of logging information. This makes it difficult for clients to make use of structured logging information, if available. For example, i…