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Hello,
I am working on CNV calling for the WGS sample. I generated .cnr and .cns files using batch and --method wgs option.
When ideogram was generated using diagram option, it was a very clumsy …
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Hello, I tried to run strelka on a wgs dataset with matched tumor and normal tissue, i also fed in the smallindels file from manta but unfortunately the result vcf files are all empty. The header of t…
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I'm trying to run somaticseq_parallel on some samples VCFs to call the AI consensus.
The version for SomaticSeq is SomaticSeq v3.7.3. Version of XGBOOST is 2.0.2
I've run all mutation callers, then,…
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Hi,
I just installed battenberg and try to run in on my WGS data.
Unfortunately I had some issues during the gc.correct.wgs R function process.
After investigation, I noticed that since Battenber…
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Both standards shall be used. If only one location information is present the other one shall be calculated.
http://en.m.wikipedia.org/wiki/Maidenhead_Locator_System#section_3
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Hello!
After I installed the wgd software, running the command "wgs ksd" will report an error "
from numpy import double, empty, array, ndarray, var, cov, dot, bool, \
ImportError: cannot impor…
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It seems pretty out of date now as the things mentioned have been (or are being) handled by other WGs currently.
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The comment " Failed to parse QName 'ms:'" actually appears _thousands of times_.
``` r
library("EMODnetWFS")
service Loading ISO 19115 codelists...
#> ✔ WFS client created successfully
#> ℹ S…
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Thanks for developing this nice pipeline. I'm trying to use it for WGS data.
In the wiki page (https://github.com/cbg-ethz/NGS-pipe/wiki/Installation-&-Testing), I saw the the command lines for WGS …
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Hi-
I am looking to run 10X Multiome (sc paired RNA & ATAC) and I want to multiplex my samples and use a SNP array or WGS to demultiplex using SouporCell. I have not run the experiment yet so I was…