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Hello everyone,
I am runing star-cufflinks-rsem to analyse my transnomic sequencing data, everything is all right until I turn to use rsem to calculate the gene expression.
The RSEM gives me an err…
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Migrated from https://redmine.open-bio.org/issues/2929 filed by Miguel, on 2009-10-15, in reference to the table parser issue now logged as #1721.
> With the problems encountered while parsing plai…
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Hi,
Im using Rstudio server from a docker image (rocker/rstudio), im trying to run the first example code inside de package help page, but im getting the following error:
``Error in plot.window(..…
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After uploading the Fastq file and ref genome (.gnk), submit the Alignments mission. Then it shows ERROR, and I open the 'bwa_align.error' file and see the following error. I'm not sure what's going o…
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In CPANG19, many students wanted to project a complex graph (not even alignments to it, but the paths in it) out to a VCF file.
It seems like `vg call` could be able to do something like this, shou…
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### Description of feature
The current stop-codon detection in ampliseq could be improved and supplemented with frame-shift detection by implementing [MACSE](https://doi.org/10.1093/molbev/msy159). T…
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The Official script schema supports providing alternate images for different alignments. For non-travelers, the image array should be [normal_alignment, inverted_alignment], for travelers, it should b…
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Hi,
I am excited to test CONSENT with a nanopore dataset of about 60x of a 600Mb genome. Its about 2.8 mio reads (41 Gb total length). Unfortunately, all-vs-all alignments expands very fast and i …
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Hi,
I have a question/require help. When implementing call caching and using a scatter, if a task/shard fails does cromwell restart then entire task?
Example. I am running ~200 alignments creat…
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The class `alignwide` on the `` wrapping class should extend the image inside beyond the width of the text column. The `alignfull` class is supposed to extend the image all the way to the outer bounda…