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As @jameshadfield [put it here](https://github.com/nextstrain/ncov/pull/709#issuecomment-904276901):
> I really want section headings (e.g. "Analysis" or "Getting started with analysis") to be simply…
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Paolo: in https://github.com/Ethan-Loo/Bioinformatics_Data_Curation_Collaboration/blob/main/Waldron_Lab_Curated_Schema.yaml use:
* description: definition of the variable. Should make clear to user…
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### Setup
I am reporting a problem with Biopython version 1.79, Python version 3.10.6, and operating
system as follows:
3.10.6 (main, Aug 10 2022, 11:40:04) [GCC 11.3.0]
CPython
Linux-5.15.0-…
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We discussed briefly in this ticket making use of a mapping between GO MF terms and Rhea.
https://github.com/intermine/pombemine/issues/16
by making Rhea reaction components available (ideally …
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Description: I propose adding a new function molecular_weight() to the BioSequences package that calculates the average or monoisotopic molecular weight of a protein or nucleic acid sequence. The func…
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Some pipelines need to filter PSMs taking into account the Search Engine provisioning (which search engines have identified the corresponding spectrum), we see two cased here:
- [x] Filter Peptide…
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Does anyone have a nice one liner to get GFF out of abricate output?
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I have installed the Conda package version 1.8.13
check throws these errors:
ruy@inv:/dataset/funannotate$ funannotate check
Checking dependencies for 1.8.13
To print all dependencies and ve…
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Curating a paper today with @CuzickA
There was some bioinformatics analysis demonstrating that A9JX75_PHANO is a likely chitin binding protein with various evidences.
We haven't needed to do …
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DOIs can be entered wrong (see https://github.com/bio-tools/biotoolsRegistry/issues/281)
Must check they are resolvable.
Also check for erroneous whitespace (in case this isn't fixed in bio.to…