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Hi,
In my pipline, I use AnnotSV to annotate a blank vcf (there is no varaint record in vcf, only the `##` headers ), leading to an error:
```
SVinputFile (svaba.sv.vcf is empty, no SV to annotat…
xiucz updated
2 years ago
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https://mp.weixin.qq.com/s/6i7Io5en13XXlPt6R1uf1A
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Hi there!!
I am trying to create a Platypus object with GEX and VDJ (B cells) together, but only the vdj part run successfully. I have the following files from the count folders of cellranger (as …
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Hello there! What is the **normalization** applied to gene expression values when retrieving the "**RNASeq2GeneNorm**" data instead of "RNASeqGene" assay? I cannot find any other description online ot…
mlmms updated
2 years ago
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Hi all,
I'm new to bioinformatics so not sure what to do here. Trying to run the command 'bactopia datasets' but got this issue. Can someone help explain this to me to understand it better and …
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In the long run, it might be a good idea to introduce a module to sanity-check the input data before building the signatures.
In principle, we don't need to keep all the cells in each cell-type clu…
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Hello,
I find dynamo a great tool for single-cell analysis tool.
However, I found it hard to install this package because the network of my cluster is bad.
Is there possible provide a docker image …
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Hi!
In my first metagenomic study, I have used Kaiju v.1.8.2 for taxonomic classification and using Progenomes database.
Nevertheless, I would like to know if is there any availble kaiju progeno…
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iqtree2 fails because of a wrong header for the outgroup.
outgroup="-o NC_063383"
cat nextalign.aligned.fasta | sed 's/NC_063383.*/NC_063383/g' > nextalign.aligned.fasta.renamed
nextali…
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**Describe the bug**
The version 2.9.1 used by the latest Megalinter is affected by bug [785](https://github.com/hadolint/hadolint/issues/795): false positive on pragmas.
**To Reproduce**
Dockerf…
DrYak updated
2 years ago