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On this thread we can keep track of the enhancements which would be nice to have.
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Running CNVkit call with default pramaters I got excessive loss call so I have tried using –ploidy 3 then –ploidy 4 and 5. I was expecting some changes on the results but they were the same. Would you…
CKZan updated
2 years ago
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Hello,
I am interested in using Giotto to calculate spatial correlations on a reduced dimension representation (NMF) of my visium spatial transcriptomic data. Is it possible to calculate the spati…
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Dear Team,
iguide has been used successfully in my lab for human datasets. Thanks. It is a nice and useful tool.
Now we are testing iguide in analyzing mouse datasets. The mm10 reference genome …
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**Question:**
We are looking to include predictive associations in a knowledge graph using the BioLink model. Are there currently qualifiers to specify `is_predicted` with a boolean value and/or `pre…
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Hi Nick,
Thanks again for a great tool. When you get a moment, would you mind helping me understand the following points?
**Q1.** I was wondering about the whether the output of `FindAllMarkers…
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Global Warming Potential (GWP) is an essential metric for any portfolio decarbonization decisions. There are many bottoms-up datasets that contain information about CO2e emissions, but it is difficul…
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I really love this tool and the output it gives, even for users like me.
From the RBP researcher point of view I have small suggestions:
- A normalization of overlaps like it is done in homer ( …
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Hello,
I'm getting an unexpected error, originating in `stringr`, associated with use of `sfn_metrics()` or `daylight_metrics()` when the `tidy = TRUE` argument is used.
```R
library(dplyr, war…