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We yet have support for "ortholog-phenotype" associations implemented by populating our solr index with subject_ortholog_closure, before we implement that, it's worth considering whether it would make…
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Thanks your good software, I have a question about it.
How to extract ensembl id from seurat object. Because I found that one gene corresponds to two ID. Such as ATXN7 corresponds to ENSG00000285258 …
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@rawnakhoque I asked the PDF in our lab and he showed me that everything has been done in bash. Follow the installation and basic configuration step by step [here](http://homer.ucsd.edu/homer/introduc…
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Hi there,
Thanks for the package.
Having some issues with a human dataset that had human ensembl ids that I had to convert to HGNC symbols for Cytotrace 2.
Here's the error:
cytotrace2: St…
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## Describe the issue
The issue here seems to be that the VEP (Variant Effect Predictor) tool is unable to locate and load the required plugin, specifically dbNSFP4.1. The error message indicates tha…
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This issue will track discussion related to the potential annotation and ingestion of GraphQL endpoints in BTE. There are a few public GraphQL endpoints that would be useful to query in BTE:
* Ope…
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Like this?
```json
{
"id": "http://purl.obolibrary.org/obo/MONDO_0014957",
"meta": {
"mappings": [
{
"pred": "exact",
"val": "UMLS…
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@cmungall suggested that our next g2d should be GenCC
The data is available in tsv format: https://search.thegencc.org/download/action/submissions-export-tsv
It has all fields quoted, and it loo…
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I find it annoying to not easily see that there are many pombe : 1 human ortholog
can we have a count column to see how many pombe genes map to a single human gene?
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hello,
I'm running my data on cpdb_statistical_analysis_method.call() function.
```
from cellphonedb.src.core.methods import cpdb_statistical_analysis_method
cpdb_results = cpdb_statistical…