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**User story**
As a team lead I would like users to be able to submit samples for sequencing on the new instrument type of NovaSeqX so that we can support the latest sequencing technology.
**Who a…
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Hi,
1. When i used contigs file, no result obtained.
2. But when a subset was made and used for analysis then following result obtained.
3. But No data in warnings folder.
Pls suggest.
Thanks
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Hi Matt,
I was looking at your original code for the PSMFC byssus project and was wondering why specifically you cut three different adapter sequences? Did the UT sequencing facility provide guidance…
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### Description of the bug
Getting an error at process `NFCORE_AMPLISEQ:AMPLISEQ:DADA2_QUALITY (FW)`
Command to run the pipeline is (`--max_cpus` and `--max_memory` were determined based on system…
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Hi @edsu7,
Please find a csv with samples where the sequencing_instrument needs to be updated from Illumina NextSeq 2000 to Illumina MiSeq.
Please let me know if you have any questions,
Kirst…
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Hi,
I'm tring to test Deepvariant in my own panel data and set --regins to the interest regin, but something happend in my output. I provided reference gene hg19 and index it with samtools index, a…
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Hi @FelixKrueger
I had a question on what's the correct command line options to be used to generate CX reports.
Based on what you suggest [here](https://github.com/FelixKrueger/Bismark/issues/…
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### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://hu…
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The U.S. Cybersecurity and Infrastructure Security Agency (CISA) has released an Industrial Control Systems (ICS) medical advisory warning of a critical flaw impacting Illumina medical devices.
The …
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Hi DeepVariant team,
I have been using DeepVariant (v1.1.0)to call small variants for a human genome with approximately 50X coverage of HiFi reads. During my analysis, I noticed that DeepVariant …