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Hi there @aki-559 @friendflower94 ,
The repository you shared in your recent preprint (https://www.biorxiv.org/content/10.1101/2021.08.09.455756v1.full.pdf) doesn't currently allow for issues to be…
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Dear MOSCA Devs,
First, thanks for making MOSCA, this is a great tool!
Unfortunately, I'm having an issue with the pipeline that seems to be getting stuck during preprocessing. I'm not sure if i…
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snakemake: error: unrecognized arguments: --threads=8 --mem=60 --large_mem=250 --large_threads=8 --assembly_threads=8 --assembly_memory=250 --tmpdir=/local_scratch/student198 --database_dir=/scratch/p…
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Hi there,
Trying out `multik` with some Nanopore metagenomics reads (`seqtk`-formatted) and I'm currently getting the errors below as it iteratively goes through the different `-k` values. Any idea…
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Hello all,
I am hoping to use SPADES 1.13.0 for a short read (Illumina, 2 x 125 bp) metagenomic assembly. I first tried a normal assembly, but the run got stuck at the error correction step, as I t…
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![image (1)](https://user-images.githubusercontent.com/1504015/107835048-004eb680-6d4d-11eb-8820-b12abd793eac.png)
Feedback:
not the right database for taxonomy. these are habitat names not speci…
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Dear Sir:
I install new version 1.3 of ngless recently using conda ( in the past, I had the 1.1 version and I removed the old one) by creating a new env.
However, when I tried to run this. I found …
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Hey there. Weirdly, while `SPAdes 3.15.2` runs normally for one of my samples, for the other (separate run) it hangs at K-mer Counting (kmer_data.cpp, below) within a snakemake pipeline, using a binar…
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Hi,
I assembled pair-end metagenomic reads via spades. I used two sets of k-mers to evaluate the assembly quality. The raw reads were 250bp long.
**Assembly-1** with k-mers- **21,33,55,77**
**…
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Dear all,
I think I understood this pipeline and I already have used similar software [PanPhlAn] that goes through a similar path (build pangenome, compare reads, etc). I now want to use StrainGE,…
drelo updated
3 years ago