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In order to start external beta testing we need to:
- Fill out the Test Information section in App Store Connect
- Submit to Apple for review
Here is the information we need:
1. **Beta App Descript…
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Please install
priority
- [ ] toolshed.g2.bx.psu.edu/repos/iuc/krakentools_extract_kraken_reads/krakentools_extract_kraken_reads/1.2+galaxy1
others
- [ ] toolshed.g2.bx.psu.edu/repos/iuc/krake…
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Hey @allind
I tried to install eukdetect but when I run this command:
conda env update --name Eukdetect -f environment.yml
it gave an error saying:
SpecNotFound: Invalid name, try the format: us…
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Guts within guts: the microbiome of the intestinal helminth parasite Ascaris suum is derived but distinct from its host – Ankur Midha et al. – Microbiome 2022
https://microbiomejournal.biomedcentra…
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## Is your feature request related to a problem? Please describe
For microbiome/metagenomic screening analysis, typically the main file type is an OTU table. We already have this with Kraken, but d…
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Household environment and animal fecal contamination are critical modifiers of the gut microbiome and resistome in young children from rural Nicaragua – Molly Mills – Microbiome
https://microbiomejou…
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Salivary microbiome profiles for different clinical phenotypes of pituitary adenomas by single-molecular long-read sequencing – Xuefei Ji – Microbiology Spectrum
https://journals.asm.org/doi/10.1128…
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Effects of OsomeFood Clean Label plant-based meals on the gut microbiome – Dwiyanto Jacky – BMC Microbiology
https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-023-02822-z
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OTU tables (counts) will be permitted in CoNekT Grasses Microbiome.
Main models in mind:
* OperationalTaxonomicUnitMethod - will describe methods used for generation of OTUs (e.g., clustering al…
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As discussed in here https://github.com/microbiome/mia/pull/370, the naming of importers is not unified.
`load*` should create `TreeSE` from provided file path (e.g., path to BIOM file).
`make*` s…