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## Expected Behavior
GFF with the found profiles.
## Current Behavior
Stopping at collectoptimalset step.
## Steps to Reproduce (for bugs)
easy-predict --num-iterations 2 --metaeuk-tcov 0.4 -…
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Hi,
One of my dataset (141 samples) have been running for 5 days, now it threw an error message said:
```
Error in rule secondary_nt_lca_table:
jobid: 2734
output: hecatomb_out/RESULT…
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Hi,
I'm currently trying to get hecatomb working on a VM, but I've run into a Java-related error. The support for said VM and storage servers told me that this error was not related to the VM, and …
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## Expected Behavior
I want to get taxonomic annotations of my nucleotide database (97 GB) with uniprotkb.
## Current Behavior
The first filtering step (easy-taxonomy) runs for about 12 hours n…
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Hi,
I use mmseqs results(default format) as search results for GeMoMa, but I got the following errors, why?
java -jar GeMoMa-1.8.jar CLI GeMoMa s=duck.blast ...
Problem while gene: gene-FBXW7_
…
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The method for building profile database is wrong in the current CI.
`mmseqs convert2msa` only supports Stockholm format. Thus, the MSA of Cas 7-11 cannot be correctly converted and will lead to `Flo…
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* phrokka version: 1.0.1
* Python version: Python 3.9.13 (build deps with conda)
* Operating System: Debian GNU/Linux 9 (stretch)
Dear developers, first of all, thank you very much for making thi…
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## Expected Behavior
mmseqs2 should remove exactly identical sequences if I run linclust or cluster on the attached file.
[pdb_seqres.protein.fasta.gz](https://github.com/soedinglab/MMseqs2/files/21…
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This issue is similar to #142 which was closed but no solution was provided. Rather than use the webserver (https://a3m.mmseqs.com/) I would prefer to run the MMseq2 locally with the --host-url switc…
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Hi Mike,
The tophit.m8 should have these columns:
query | target | evalue | pident | fident | nident | mismatch | qcov | tcov | qstart | qend | qlen | tstart | tend | tlen | alnlen | bits | qheade…