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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/fmicompbio/monaLisa
Confirm the following by edit…
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- Repository: https://github.com/FertigLab/ATACCoGAPS
Confirm the following by editing each check box to '[x]'
- [x] I understand that by submitting my package to _Bioconductor_,
the pack…
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I am interested in the known TFs and their targeted genes used for training in SCENIC. Could you please provide the database and make it availabe? I would appreciate it very much.
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Hi,
I'm a doctoral student from Nanjing Medical University. Recently I read your exquisite article . I tried to use macs2 for our data application although exomePeak and MeTPeak will be my first ch…
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Nice work! And the benchmark really helps!
When I try to reproduce your work, I've met the important problem that `The large discrepancy between the number of filters that match any motif in the JA…
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We should add tasks for the following:
- [x] Open peaks per metacell: https://github.com/dpeerlab/SEACells/blob/1d3108bafdaaddc4efd61c2f4f154ea6f32c05b2/SEACells/accessibility.py#L6
- [x] Gene acces…
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When I run
```
create_cistarget_motif_databases.py -f Athaliana.Col-0.HPIv01_10k.promoters.fasta \
-M motifs/ \
-m motifs_…
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Many thanks for the nice work. I just finished reading the Van de Sande paper, and have performed a regulon analysis on our data.
One thing I would like to do is to assess which regulons are most …
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https://mp.weixin.qq.com/s/pN4qWdUszuGqr8nOJstn8w
ixxmu updated
2 years ago
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Hello,
I am having trouble running taiji (v1.2.1.3) on some human RNAseq/ATACseq data which ends with this error:
```
[ERROR][07-29 18:51] ^[[0m^[[0m^[[31mRNA_Convert_ID_To_Name(deb6..) Failed:…