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Hi Neo,
I have read the online tutorial and papers for the Jackstraw method, and I am very confused about what is sampled in the jackstraw method.
For PCA, it seems to sample the variables (feat…
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@ajitashree @hamimzafar @krushnapavan9
scDreamer is unable to read the `Anndata` object as described in a previous issue [here](https://github.com/Zafar-Lab/scDREAMER/issues/2). The code I am usin…
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Hi, Thanks for developing this great tool.
I am wondering can I manually add new metabolites-sensor pair in mouse_met_sen_October-25-2022_14-52-47.tsv file?
I tried to add a new one myself, but the …
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Hi,
Thanks for this super good tool!
I'd like to create a seurat object using some online datasets whose platform is multiome. But what I could found is they upload the atac_fragments.tsv and at…
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Hi Jeffrey and Ryan,
Thank you so much for developing this wonderful tool and we are actively using it for 10X scATAC-seq and multiome analysis. I'm following https://greenleaflab.github.io/ArchR_2…
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Hi there Cassiopeia Team!
I might be interested on using your tool for lineage tracing on a scRNA-seq dataset I am working with. However, this dataset has no CRISPR-Cas9 preprocessing of the cells …
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I have been trying to run EcoTyper scRNAseq discovery on a scRNAseq dataset. When I set the config Filter genes to "cell type specific", I get the following error:
Step 2 (cell state discovery on …
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https://mp.weixin.qq.com/s/P9h_YTMsSgDPniPZqgn-yg
ixxmu updated
1 month ago
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### Description of the bug
Hi Zewen! Great package I really have been enjoying it as I try to prepare a pipeline for some mouse scRNAseq with BCR/TCR paired libraries. I comment here to say that in r…
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### Description of feature
Cellranger requires the fastq files to follow a specific pattern. It would be nice to have the pipeline taking care of renaming the files.
One possibility would be to crea…