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I am trying to install Anvi'o on the linux server at my institute using the instructions in the [Anvi'o manual](http://merenlab.org/2016/06/26/installation-v2/#installation-with-varying-levels-of-pain…
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Hey Ozcan,
This is probably trivial, but anytime I change the colors in the intensity section, and hit 'Draw' the interactive site is stuck on 'Drawing' (screenshot attached).
![screen shot 2017…
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Firstly, I apologize if this is a simplistic issue that can be resolved looking through the manual--I tried, but I wasn't sure exactly which unctions could help me do wheat I need
I am currently tr…
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Hi Meren,
Thank you so much for taking a look at my data. Attached is my taxonomy matrix. I try to import it using the following command:
$ anvi-import-taxonomy -c A1_contigs.db -i A1_correct_ma…
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Hi,
I have run dereplication. Genomes have been properly dereplicated but it has been an error during the bonus step:
This is the command I have run:
dRep dereplicate -p 28 output_dir -g geno…
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I installed anivo3 via conda and run
anvi-run-hmms on a database of binned contigs.
I would expect 1 genome with 70%, it should contain 16S.
```
HMM Profiling for Ribosomal_RNAs
==========…
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Hello,
I am working with some single-cell genomes trying to learn from scratch anvio. I have ran into some difficulties in the process that maybe you could clarify on?
1) I have been following t…
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Hi Christian,
I have two questions.
1) When I ran the sample data, I received this output in terminal:
`DAS_Tool.sh -i sample_data/sample.human.gut_concoct_scaffolds2bin.tsv,sample_data/samp…
ghost updated
7 years ago
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```bash
$ anvi-mcg-classifier -h
/Users/meren/virtual-envs/anvio-master/lib/python3.6/site-packages/matplotlib/__init__.py:1405: UserWarning:
This call to matplotlib.use() has no effect because the…
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Hey there!
I installed the stable v3 with virtualenv, passed the sweet mini suite test with no issues, but when i tried to look into this program i got a missing matplotlib error. Running pip in t…