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https://mp.weixin.qq.com/s/niqzsfDMufergpIAZ8sgXQ
ixxmu updated
2 years ago
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Hello, thank you for the great package. I wondered whether you could explain in more detail the difference of applicability of fgsea-simple vs fgsea-multilevel - in particular, in your paper you descr…
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https://mp.weixin.qq.com/s/pN4qWdUszuGqr8nOJstn8w
ixxmu updated
2 years ago
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Dear author, thank you very much for this great software to analysis Ribo-seq data. Recently I use this software to analysis seRP Ribo-seq enrichment, I want to make a single trancript enrichment ,thi…
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Hi again,
I'm trying to set up pepatac with a genome not present in ensembl. Pepatac is working great, but I'm need of some final help to get it fully working.
I have use refgenie to build the reci…
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Hi @timoast
The other step can run successfully, and the DimPlot had be drawed already. however, when runing on RegionStats step get below error.
I guess that the genome i used had the scaffold de…
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Good morning. I am trying to use goatools to perform a gene list enrichment based on HPO ontology (). I am providing an OBO file, with the same format as the one from Gene Ontology, and an annotation …
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Hi,
From the output of module 8, I found that column enrichment_z does not equal to enrichment_mean/enrichment_se, does that mean that Z score is derived by a different method? How should the sign…
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This is a great package - thank you for making it!
I was wondering whether it would be possible to look at the relative contribution of individual genes to the enrichIt score by any chance? Thank y…
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According to @kevinxin90, the gene-pathway information is from http://consensuspathdb.org/ . However, this hasn't updated in ~2 years.
Maybe we can get the pathway data from somewhere else. For exa…