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I keep throwing the same error every time I try to plot the drivers vs signatures plot:
> matprob sig.cols for(i in 1:nrow(matprob)){
+ g
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The program runs some steps, then an error occurs.
after relabling, there are 140259 eq classes
Building the k-mer equiv. class transcript mappings
0% [> …
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Hi,
Thanks for the great tools included in scanpy.
I was searching to see what the logfoldchange numbers in the `rank_genes_groups` are. i.e. is it natural log/log base 10 or log2? The code in…
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I would like to understand how Sanity reads the .mtx file generated by CellRanger and prints the number of rows, genes and cells. For example, I have a matrix.mtx file generated by CellRanger which ha…
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Hi !
Thank you for your outstanding software. While following the tutorial for analysis, I filtered `da_result` to remove some irrelevant cell types in `plotDAbeeswarm`
```
>packageVersion("mil…
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Hello,
I hope you're doing well. I wanted to express my appreciation for the remarkable repository you've created on GitHub in the field of aging biology.
I am currently involved in research related…
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This is to address the conversation from @artemy-bakulin original commit fe688806bb7dc545b16bc1cf7c00a7360993cdc1
Artemy brings up the point about class imbalance here: https://github.com/noamteyssie…
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I find it useful to see the absolute genomic coordinates when working with large chucks of DNA and even with genes, for instance, when working in parallel with other tools such as genome browsers or B…
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Hi,
I'm using the get_tx_seq function from gtftk and I'm getting this error
Here the header of my genome_fasta.fa file :
>1 dna:chromosome chromosome:GRCm38:1:1:195471971:1 REF
NNNNNNNNNNNN…
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Hi Christoph,
Thanks for all your work.
When we use Scaledata we can specify the gene, for example"pbmc