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Ticket to discuss use of "transformant" allele type.
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## **Tasks related to Sara leaving the group**
### General
- [x] Share with Vincent the awk script to set omit 2 values for selected endpoints in the Risteys endpoint definition file: `set_omit_val…
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This seems very problematic that an exact duplicate mRNA line is not seen as a en error.
See attached.
[Duplicate_mRNA.txt](https://github.com/genometools/genometools/files/232485/Duplicate_mRNA.txt…
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I keep getting an error, any suggestions?
Thanks, Gilberto
INPUT
eg.gene
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So far I've been unable to find recombination rates for GRCh38. May need to liftover the previous GRCh37 rates. The GRCh37 rates currently in locuszoom were generated by lifting over GRCh35:
> Thi…
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_From @stanstrup on October 19, 2017 13:11_
*Functions added to package:*
- [X] LipidMaps
- [X] LipidBlast
- [x] HMDB
- [ ] MyCompoundDB
- [ ] PhenolExplorer
- [ ] PubChem. Too big? Not real…
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Hi,
I'm trying to run lncLOOM with the '-eclip' option but I need the narrowPeak data first. Is '/home/caroline/eCLIP/narrowPeakApr2019' a folder of all ENCODE Narrow peak files in bed format or is …
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**Describe the bug**
Reads seem to not distribute uniformly across the genome. I expected some bias but there are long regions with coverage = 0 and others with coverage = 150, when the `neat read-si…
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Hello,
I was testing accelalign performance, both in terms of speed and downstream accuracy. It seems to perform quite fast, but I finding issues with downstream analysis. Some of the tools (e.g.…
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Hi Folks
I am having trouble getting bcbio to run on my torque cluster with variant2.
I updated to the latest development release, but it was giving the same problem before.
The cluster has 1…