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Hi Ryan,
We’ve been thinking about using STIX to generate a control database for querying somatic SV calls output by Manta (our preferred SV caller). Basic idea is to use ~100 germline BAM samples,…
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Hey @LeeBergstrand Do you think it would be possible to include the genome properties in the docker. I have a hard time to install the perm modules needed to run the genome properties scripts.
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I'm trying to do some benchmarking of CRAM-JS and am having some trouble with the example code.
I have three cram files and their corresponding crai indices as well as the reference sequences in s…
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The are a number of URL parameters that do not seem to be used anymore since they have been made hard-coded values in places like https://github.com/cBioPortal/cbioportal-frontend/blob/master/src/shar…
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Home > View genome > Variants channel > open settings > Colour By: Position [the first one]
I've got a feeling this might be a duplicate...? (Or at least related to another issue...?)
```
invar…
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你好，因为 tensorflow/contrib/slim/python/slim/nets/resnet_v1.py 和tensorflow/contrib/slim/python/slim/nets/resnet_v2.py 极其相似，所以我将 lib/nets/resnet_v1.py 中的出现resnet_v1的地方替换为resnet_v2，作为resnet_v2.py，但是re…
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## Bug Report
### Affected tool(s) or class(es)
CreateReadCountPanelOfNormals
### Affected version(s)
- [ ] Latest public release version [4.1.0.0]
### Description
When you run it on a si…
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Is it possible to download a single toplevel without getting all of its dependencies?
For example, if I download a yeast strain, I'd like to be able to get just the lightweight ModuleDefinition and…
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Hello,
After upgrading to the latest development version, the logs and joint VCF file generation don't seem to work properly anymore. Debug messages don't get printed anymore (neither on stdout, no…
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looking at https://github.com/NAL-i5K/tripal_eutils/tree/master/examples/assembly for examples.
below are example tags from 751381 that arent dealt with via dbxrefs/linked records
```xml
…