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Hello, I am getting this error when running this on my Visium object.
I have checked that the seruat object version is >5
my code is:
`for (i in sample_IDs_list) {
print(i)
filename=p…
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Note - please check that the term does not already exist (check OLS: https://www.ebi.ac.uk/ols/ontologies/cl)
**Preferred term label**
valve interstitial cell
**Synonyms** (add reference(s), pl…
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### Discussed in https://github.com/jamesdolezal/slideflow/discussions/311
Originally posted by **lysukhin** September 13, 2023
Hello, @jamesdolezal and contributors!
First of all, let me tha…
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"Variable" concepts:
35918519 [Grade Post Therapy](https://athena.ohdsi.org/search-terms/terms/35918519)
,35918542 [Grade Clinical](https://athena.ohdsi.org/search-terms/terms/35918542)
,35918640 […
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#### What data file(s) does this issue pertain to?
`tcga-gene-counts-rsem-expected_count-collapsed.rds`
#### What release are you using?
v14
#### Put your question or report your issue h…
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Hi,
With `pkgdown` version 2.1.0, I'm running into the following error when using `pkgdown::deploy_to_branch()`.
```R
Error in `build_reference()`:
! Failed to parse Rd in vis_gene_p.Rd
Caus…
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https://mp.weixin.qq.com/s/Y1rBQh-G7R_EaEdNMENHdA
ixxmu updated
2 months ago
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Greetings Chandler (@cdgatenbee),
I encountered a corner-case when processing a histology stack recently. It occurred in the image normalization step, prior to registration. The error was thrown fr…
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#### Which new datasets are being added with this release?
No new datasets
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
Add PBTA samples:
- [x] PB…
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Destandardize and map to Cancer modifier:
[grade_LOINC.csv](https://github.com/OHDSI/OncologyWG/files/13178247/grade_LOINC.csv)