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Hi,
When I run mixcr, `mixcr analyze smartseq2-vdj-full-length -s hsa --rna --threads 4 fastq_1.fastq.gz fastq_2.fastq.gz outdir` it throws the error Error while running command refineTagsAndSort j…
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I have been working through using the SRA toolkit the past couple days. Me and my lab are hoping on downloading some 10x genomics single cell RNA-seq data to analyze but ran into issues downloading th…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Description of the Bug/Issue
1. Cloned this github repo
2. Downloaded the influenza database and metadata fro…
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https://mp.weixin.qq.com/s/1WwI7kIRVqHZXpqYmfkTnQ
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Hi,
when I try to run the [code block about downloading example data](https://github.com/o-william-white/genome_skimming_pipeline#download-example-data) my miniconda doesn't like the arguments. Wha…
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Is it possible to pipe a fastq file with Spring?
I 'd like to use the binary thresholding in the compression step to reduce the size of a fastq file, but I want to generate a converted fastq file,…
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Hi,
I've downloaded the .sra file of run SRR9123299 using prefetch. Based on the metadata this file should be Illumina paired-end data. However, when I try to split the file using 'fasterq-dump' I…
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https://mp.weixin.qq.com/s/VEmtPKgezPPK0KavrOLy1g
ixxmu updated
10 months ago
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### Data Owner Name
filecoin_lin
### Data Owner Country/Region
Afghanistan
### Data Owner Industry
Arts & Recreation
### Website
https://www.ncbi.nlm.nih.gov/sra/docs/sra-aws-download/
### Soc…
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Hi,
I have an issue with Flair v1.5 at the collapse step.
Here is my command:
```
flair.py collapse --gtf Araport11_GTF_genes_transposons.Mar202021.gtf \
-g TAIR10_Chr.all.fa -r [space separat…