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Here's a link to the meta issue in which all the migrators are listed (in order): https://github.com/microbiomedata/nmdc-schema/issues/1607
Here's the path to the previous notebooks (each one only …
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### Task
- [ ] Recreate the web app VM on Jetstream2
- [ ] Write a script that automates the process
- [ ] Document the process
Work with @mflynn-lanl to understanding the requirements around …
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To streamline the user experience across the 3 NMDC products, we are working towards integrated authentication using ORCiD. Towards this effort, we have completed ORCID membership requirements and dep…
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"NMDC fields esp. GOLD paths" is not a clear section name.
I suggest putting all of these terms below into a section called “NMDC”. Please review @mslarae13 and reassign to @turbomam if you think …
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#### Tasks
- [x] 1. Determine whether the Runtime is using that variant of the schema because it depends upon something that is specified to it, or only because it _used to_ depend upon something spe…
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It seems like there's a general pattern of "we put this stuff in the `Definition` because we can't trust users to look in the other fields"
LinkML provides extensive [common metadata](https://linkm…
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there are `data_object_type ` values of "Metagenome Raw Reads" in mongodb, but that is not yet a permissible value in `file type enum`
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The JAWS team has set up a site on Perlmutter for NMDC. Test that this works on an example workflow.
aclum updated
2 months ago
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some `structured_patterns` in the nmdc-schema appear to start with a ^ and others don't , that means we have some structured_patterns that materialize to something starting with ^^
separated out fr…
aclum updated
3 months ago
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Example content:
- Shell script to set up the VM from its freshly-created state (install Docker and `ufw` firewall?, create users/groups)
- Shell script for setting up the [firewall](https://github.…