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I hope I'm not missing something silly here. I'm seeing these two results for the same peptide for two different scans:
```
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Hi, I have a query protein sequence and I want to find orthogroup for that sequence. I don't know in howmay species its orthologues are present. How can I run orthogroup for it. What I understood from…
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Hi. First: great idea :) I've noticed a bunch of people I follow on twitter bumping this up... I wasn't confident enough to contribute in the first iteration years ago, but now I do wanna do stuff 🔥So…
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If a peptide can be mapped to multiple proteins, the 1.0 specs recommend duplicating the rows, and just changing the accession. I have a strong preference to change this so that multiple accessions ca…
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The `openFasta` (and `openFastaElectron`?) methods in Browser should try to detect if the sequence is protein, and if so, set `config.seqType="protein"` to activate @erasche's protein color scheme fro…
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Now the protein is always showed in cartoon representation it would be nice to show protein as a electrostatic colored surface. This will show more easily where the ligand is close to the protein.
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A toy model of metabolism consisting of 3-4 reactions (glucose import & subsequent conversion) will be integrated with the submodules changing protein counts np of the enzymes catalyzing the metabolic…
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Hi, I was using command `seqtk subseq uniprot_sprot.fasta name.txt > out.fa`
my name.txt looks like:
```
sp|Q9H2Y7|ZN106_HUMAN Zinc finger protein 106 OS=Homo sapiens OX=9606 GN=ZNF106 PE=1 SV=1
s…
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Hi everyone,
I'm using Microbeannotator to re-annotate some plasmid proteins I've got in a Prokka.faa file. As I built the database with diamond method, I launch microbeannotator with the same method…
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Hi,
On the webserver there's an easy way to create a task which calculates the volumes of predicted pockets from P2Rank. Is there a way to run these tasks from the CLI? I've got a population of pr…