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In the iq package, we use the following code to compare protein quantification between iq and MaxQuant?
Line1: w1
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I have been trying to prep a local folder of 56 structures using the CLI via ` asap-prep --target SARS-CoV-2-Mac1 --structure-dir SARS2_Nsp3_Mac1_main --save-to-cache --cache-dir mac1-prepped --output…
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They seem to be missing.
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- The uniprot database (http://www.uniprot.org/) contains information about proteins. The goal is to download information about malGlo and malSym proteins, parse out info about particular regions and …
mrshu updated
6 years ago
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See line _1392_ as example,
`atom._coords = [ [ float(rec[5]), float(rec[6]), float(rec[7]) ] ]`
the `rec` here comes from line _1308_:
`rec = split(rec)`
Sometimes protein PDB file content looks…
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Amber can give different names to histidine amino acid by examining which protons are present : HID, HIE, or HIP instead of HIS.
This raises an issue when featurizing the protein in Diffdock becaus…
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I'm attempting to generate predictions for multimeric complexes, where one chain is a chimeric/fusion protein and has components from different organisms. About ~85% of this chain is from one organism…
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Hi, thank you very much for this paper and codebase. Sorry if my question is super simple, but I was curious about the `DMS_filename` entries you referenced in DMS_substitutions.csv. I am trying my be…
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while running protein_process.py, I am facing an issue inside the Protein_graph_process(dataset, fold, dir_output, id_train, id_test) function.
I did not find any code which helps to generate pocket_…
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Hi!
I am trying to download the full db using Aspera and I got an error at step 9 :
Completed: 392708K bytes transferred in 58 seconds
(54553K bits/sec), in 14 files, 1 directory.
2022-02-15 …