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When running on the cloud, I seem to have instructed snakemake to download the results from the cloud at the end of the execution. Is it possible to simply have the output in `default-remote-prefix` a…
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Hi.
Thanks for your work on VIBRANT, looks quite useful for phage analysis. One minor suggestion: would you mind allowing the user to specify the base output name? At the moment this is just VIBRAN…
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## New feature
```nextflow
include { BOWTIE_ALIGN } from "github:nf-core/modules/modules/bowtie/align@somehashabcd"
```
Go:
```golang
import "github.com/google/uuid"
```
[Snakemake](http…
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@jelmerp, I've just fully updated all of my final project files. If you have a moment, could you look over what I have and let me know if you see anything not working or any poor practices/errors?
…
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What is the best way to edit the .yaml file to use the viral genome analysis sections (assembly/intrahost variation)?
Would input files need to be depleted already?
Which dir would the input file…
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**Is your feature request related to a problem? Please describe.**
I have a complicated workflow where output, log, and benchmark files are computed based on several factors. This is complicated by …
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Hello isicle developers,
I try to calculate the CCS but I have the following errors:
>>> dft2 = isicle.qm.dft(conformer2, tasks=['optimize', 'energy'], functional='B3LYP', basis_set='3-21g*', ao…
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**Snakemake version**
5.15
**Describe the bug**
I want to define a workflow in which two jobs with piped output are chained together. My test example worked fine but another workflow using th…
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> 1. What is the topic of your lesson or lesson proposal?
A comparison among workflow management systems used in the scientific field. The same workflow example (in the field of bioinformatics and …
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For example, if I write a Snakefile as follows,
input, output, benchmark, log, shell can be specified even if the Snakefile were moved to the other directory, but only conda must be set in the same d…