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Dear Vitek Lab,
Thanks for developing MSstats.
I have a question regarding adj.pvalues.
It might be my own confusion, but I see some nicely distributed pvalues (see self-generated volcano plo…
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- Describe the issue or question:
Hi Fragpipe developers, I have some confusion about the output files of fragpipe, for example, I found in LBF analysis that the peptide data of combined_peptide.ts…
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Default setting if a map is paused is to pause in the next freezetime.
If a map is paused on the last round: What can be done to not finish the map?
Example: In the last round (14-15) multiple p…
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A follow up for https://github.com/teemtee/tmt/pull/2198#issuecomment-1921488851
thrix updated
5 months ago
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- Describe the issue or question:
Hi,We have recently used the TMT workflow for quantitative analysis of data post-translational modification sites, and in the PSM.tsv results, there is a column "q…
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The addition of modifications do not change the fragment masses. I've only tested this on the Prosit_2020_intensity_TMT model but based on my quick testing, it happens with Methionine oxidation in add…
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Running a test via tmt, beakerlib should be able to automatically copy files to the path defined by the environment variable TMT_PLAN_DATA.
Checking that variable can be a way to understand if a te…
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Currently QM/Bluechi rpms exist in AutoSD repo,
Tests should include an option not to work with copr
To verify it is working,
Run TMT with PACKIT_COPR_PROJECT=release
I assume AutoSD should…
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### Please check the issue list for the same bug
- [X] I have checked issue list and this bug is encountered for the first time.
### Environment
```markdown
- OB Version&commit_id or other m…
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There is no way how to run tests in as multihost nor mark them as such.
This ticket is for gathering requirements, discussing solutions and finally reaching the consensus about the tmt way for multih…