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From branch 65 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C25566T+S:F456L
Query: C25566T,T22928C,T22926C,-23277,-C2106T
No. of seqs: 5 (Luxembourg 1 Portugal 2 Ch…
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Sub-lineage of:XDR
Earliest sequence:2024-02-08(Brazil)EPI_ISL_18970545
Most recent sequence:2024-04-03(England)EPI_ISL_19055525
Countries circulating:Peru(2), Brazil(1), United States(1), United …
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Hi,
I hope you are doing well.
We have noticed that there have been some recent changes in the designation for some lineages (https://github.com/cov-lineages/pango-designation) but were wondering …
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Unsure about the function of this new Orf9b mutation, but it is suddenly detected in a lot of countries.
KP.2.2+A28468G(Orf9b:N62S)
GISAID query: A28468G,T21737C,A25359G
No. of seqs: 9(USA 2(f…
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KP.2.3 [S:H146Q, Orf3a:K67N,Orf3d:E24*(C22000A,G25593T)] + C28714T,del21653_21655(S:S31del)
GISAID query: C22000A,G25593T,G24872T
No. of seqs: 6(USA, 2 from France, 2 from South Korea, 2 from UAE)…
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Sub-lineage of:JN.1.50
Earliest sequence:2024-05-13/France|EPI_ISL_19176467
Most recent sequence:2024-06-05/Spain|EPI_ISL_19216746
Countries circulating:France(2), England(2), Spain(1)
Sequences:5…
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By VirologiaHUCA
Description
Sub-lineage of: XBB.2.3
Earliest sequence: 2023-02-27
Most recent sequence: 2023-03-13
Countries circulating: Spain (5 Asturias)
Written description
In XBB.2.3 v…
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This can also be explained by KP.2.10+S:K1086R, but KP.1.1+S:F59S is more likely
KP.1.1+T21738C(S:F59S)
GISAID query: T21738C, G22599C, A24819G
No. of seqs: 56(Australia 1 Cambodia 2 Canada 3 U…
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Previously there was a potential 3-BP GJ.1.2/JN.3.2.1 recombinant in #991, and now it gets company in another country.
JN.3.2.1--GJ.1.2--JN.3.2.1--GJ.1.2
Breakpoint 1 between 2940 and 3430
Brea…
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JN.1+C26885T+C21654T(S:S31F)
GISAID query: C26885T, C21654T,C18894T
No. of seqs: 53(South Korea 50 USA 2(from South Korea) Spain 1)
First: EPI_ISL_18711511, South Korea, 2023-12-2
Latest: EPI_…