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https://mp.weixin.qq.com/s/FqjykN6BIV6sGTdN43axbQ
ixxmu updated
6 months ago
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hello there,
cinaR is a wonderful tools for analysis ATAC-seq
I was wondering what is format of final.matrix (Annotated Consensus peaks)
I was trying to conducting Differential Analyses in my cust…
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While trying to fit Span for ATAC-seq data, I keep getting an `OutOfMemoryError`:
```
java.lang.OutOfMemoryError: Java heap space
at org.jetbrains.bio.viktor.F64Array$Companion.invoke(F64Array.kt:…
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Hi,
Thanks for the great tool.
I am running the mtDNA genotyping viginette on one multiple myeloma sample that is originally a Multiome (GEX + ATAC)
This is the variants plot I get: (notice t…
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Hi authors, thank you for this amazing package. I would like to clarify my interpretation of the phase portraits that I obtain in my analysis. I have snRNA-seq + snATAC-seq multiome data of stem cell…
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Hi,
Thanks for adding 10X ATAC-seq support to kb, I'm trying a command similar to this one (kb_python 0.27.3 installed):
!kb count \
-i peaks.idx \
-g t2g.txt \
-x 10xATAC \
-o out \
-w 7…
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Hi
I have a question: I am running ATACseq analysis and I wanted to know - `Do reads need to be DeDuped before FRiP calculation`
- when I say DeDuped - I mean running MarkDuplicates with `REMOVE_…
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I tried to create a coverage plot along with gene annotation, but it seems that I have to choose between having a coverage plot without gene annotation and not having at all.
I found why it is bu…
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Hi,
I read your paper and did not find the text about initialized node features in the guidance graph (maybe I missed the relevant text..).
In my understanding, each node in that graph is a gen…
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### Description of feature
Hi nf-core cutandrun team
I would like to ask you a question about the +4 and -5 shifts. It is important to shift the raw reads in the pre-processing step to account for t…