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dear RubD,
Thank you for your excellent job! I Have a visium Seurat object. How can I Transform it to Giotto visum object in a quickly way ?
hoping to hear from you ,
best wishes
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I tried to install it with the command:
devtools::install_github('dviraran/SingleR')
but library(SingleR) returns there is no such library, how to fix it? thx!
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I am trying to filter my Xenium data based on the quality values (QV) of the transcripts using "ReadXenium" and "mols.qv.threshold". However, if I filter with 2 different QV (e.g. high and low), the g…
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## Description of the issue
The function _"recount::getTPM(rse)"_ returns the unexpected error message: _'Error: subscript contains invalid names'_.
Below, is a reproducible example that I have…
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Hi,
I encountered a problem when running **EpiTraceAge_Convergence** in the step 4 of the [tutorial](https://epitrace.readthedocs.io/en/latest/MSscATAC.html#step-4-epitrace-analysis). It seems to b…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
-Note: The package is currently stored on the Lab github but I do the maintenance and…
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-phenoptr package does not work with R update 4.2.0
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sce_milo
Lil-5 updated
2 months ago
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Hello Dr. Guangchuang Yu,
Using cnetplot() or any other clusterProfiler plotting functions, can you change the keytype of the OrgDb that is read when readable = TRUE, or when using the setReadable(…
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@LTLA Do you think you can look into this?
```
library(DelayedArray)
m