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I was trying to use tiff format images obtained after training and prediction (signal.tiff and target.tiff) to train the model instead of using czi format images. I created a new csv file with path_si…
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I have encountered an issue with basecall.py. Only two nucleotides (AT) are predicted in all reads. When I specify `--alphabet ACGU`, then only AU is basecalled in all reads. Guppy predicts only singl…
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https://training.section508testing.net/mod/book/view.php?id=1244&chapterid=2902
## Issue Type (put an X between the brackets to indicate issue type)
- [x ] System Bug (the course doesn't function …
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This is a thread to discuss Rust's language features and how we best implement the DHT code... presuming Philip doesn't come along with the new GraphQL API generation feature and obviate us needing to…
pospi updated
4 years ago
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Brad,
The other day I was looking at WES data of different read length and evaluated the performance of GATK4 and freebayes using NA12878. When doing a series of analyses with data trimmed to diffe…
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## Issue Type
- [ ] System Bug (the course doesn't function properly)
- [x] Typo/grammar
- [x] Incorrect content
- [ ] 508 issue (something is not accessible according to our own test process)
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Hi everyone, and thank you very much for your great work!
I tried the scispacy `en_core_sci_md` model on the [BioNLP09 corpus](http://www.nactem.ac.uk/tsujii/GENIA/SharedTask/index.shtml) and I not…
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Using NerConverter in some situations produces an exception:
java.lang.StringIndexOutOfBoundsException: String index out of range: -1
## Description
In a pipeline wirh nerconverter and with s…
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Hi,
I'm using human transcriptome ONT data and want to simulate reads. I first had the error message 'DivisionByZero' so I'm actually running with the 2.3-beta version of NanoSim. I reached the sim…
ScatF updated
5 years ago
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when running the example files like this:
```
$ spliceai -I input.vcf -O output.vcf -R ~/vep_data/cache/homo_sapiens/92_GRCh37/Homo_sapiens.GRCh37.75.dna.primary_assembly.fa.gz -A grch37
```
All…
inodb updated
5 years ago