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Hi,
I was able to successfully install and test run INTEGRATE-Neo on example2 (using GRCh38).
My issue is that when I try to run this on my dataset (which is processed using GRCh37), I get empty…
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I'm not sure if it is intentional or not, but [`fasta::IndexRecord`](https://github.com/rust-bio/rust-bio/blob/b6cb8699fb7f16e741a7840f5bcc2d850938a37a/src/io/fasta.rs#L575) is currently private. Acce…
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I was thinking it may be useful in the documentation for the `io::fasta::Writer` to mention that it is a buffered writer.
On that same note, I think the documentation starting on this line
https…
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Hi
I was wondering if before running Cactus on my 20 genomes I should rename the fasta headers to uniquely identify them, say with the variety name prefixed? Across all 20 genomes the fasta headers…
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Looking forward to collaborating on this! I just forked over the repo. I'm having trouble finding the fasta files used for training/testing the models.
Is the main goal to classify Eukaryotic c…
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These are not auto created in your output folder... they should be...
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Hi,
I'm hoping you can suggest what I might to do get a little more out of my HiC data.
I have a HiFi assembly of a ~800Gb diploid plant genome that I have previously assembled using hifiasm. Th…
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Hello,
Thanks for creating this great program!
I've been testing this on a plant genome with high heterozygosity and was wondering why the output of biscot is so big. I ran it as follows:
```
…
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I'm trying to query this: SQSSSSGSPPRRPPPGRRPF in the PDB seqres:
>pos_pathogen_0
SQSSSSGSPPRRPPPGRRPF
!grep -B 1 SQSSSSGSPPRRPPPGRRPF ../../bin/mmseq2_db/pdb/pdb_seqres_protein.fasta
results in…
tn-7 updated
5 months ago
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Hi,
Thank you for all the hard work with this great tool.
I successfully ran galah with the following parameters:
galah cluster --genome-fasta-directory binning/mags/setA \
--genome-fasta-exte…