-
Hello developers!
I'm running Clair3 on WGS data from tumor biopsies. I'm a but confused to how variants are reported in the merge_output.vcf file. In the example below, two variants can be seen wi…
-
**Case or sample information**
Internal sample id or case id:
Several cases all from ticket https://clinical-scilifelab.supportsystem.com/scp/tickets.php?number=469287 failed with errors in manta…
-
Hello,
I am utilizing a scTCR protocol where it uses dual indexing to barcode each cells. Basically, the protocol states,
"the amplification reaction contains flanking rhPCR primers ([Suppleme…
-
Hi, @ShixiangWang
We want to analyze the purity and ploidy of a set of tumor samples using panel sequencing data (over 700 genes). The segment files were from CNVkit and maf files were from Mutect2 …
-
Hi Eric,
I'm not quite sure about the average read length of our RNA-Sequencing data. The company we sent for RNA sequencing has written the below text " After cluster generation, the library prepa…
-
### Data Owner Name
National Human Genome Research Instititue
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://hu…
-
Hi everyone,
I have an issue with the CRISPResso analysis of some of my NGS samples (Input: paired end fastq files, amplicon sequence and gRNA added).
The goal is to see the editing efficiency…
-
To accommodate non-Illumina sequencing data, create an option to skip Trimmomatic or substitute with fastp
-
Robel the source file has 115 genes - /data/projects/glygen/downloads/genomics_england/current
whereas the dataset human_protein_disease_genomics_england has only 61 genes.
Some of the genes like…
-
### Description of bug
We have an internal plugin that creates a horizontal bar plot. The order of the rows is defined by how they are read from a file and we need that order preserved. Thus we've us…