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Dear Foreign Contamination Screen developers.
In submitting sequences to Genbank as genome assemblies, I was wondering if FCS actually considers endogenous viral elements as contaminating sequences…
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Hi, Dr. Yang.
The canvasPainter.py code in DeepMosaic:
Line 38, maybe should replace 'offset = 0' using 'offset = int(start-start_pos)'
Because a deletion may occur which will lead to 'start !…
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Hello @rpetit3 ,
Thank you for developing `dragonflye`.
We are trying to use `dragonflye` to perform assembly on the _E. faecium_ isolates with the following command:
`dragonflye --reads 02_fas…
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### Data Owner Name
DNAstack terms of use,Creative Commons Attribution 4.0 International,CC BY-4.0
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
#…
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>Description: The mean insert size of short paired-end sequencing [high quality](https://github.com/ga4gh/quality-control-wgs/blob/0290612d0237078dea7ae38dc13e680189fc46d1/metrics_definitions/metrics_…
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# 生信爱好者周刊(第 80 期):
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox/weekly/discussi…
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Hi, I really appreciate this pipeline and software, it performs a much better result than using Unicycler or sorely Flye.
I have an enriched microbial sample that was sequenced using both Illumina …
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### Project short name:
GSE132465_colorectal_cancer
### Primary Wrangler:
Ray
### Secondary Wrangler:
Wei
### Associated files
* Google Drive folder: [isslue315-GSE132465_colorectal…
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Hi @bachev
I want to get the sequence of a plasmid in a project that has paired end illumina reads and sanger reads (ab1 files that I convert to scf files as recommended by the manual). The problem …
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[2023_03_03_Testing_protocol_update.csv](https://github.com/cancogen-virus-seq/portal/files/10885529/2023_03_03_Testing_protocol_update.csv)
Hi @edsu7 the following samples in the above csv file need…