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# Brief Description
As title.
For some data, such as GDP, filling its NaN value with 0 isn't a good idea.
Because most of the GDP values end in million.
We don't fill NaN value with `0` rather m…
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[Shap](https://github.com/slundberg/shap) is a powerful library for model interpretation that creates interactive plots. These plots can be saved as HTML to embed somewhere else, as long as the requir…
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I have noticed that SHAPEIT4.2.1, when dealing with variants with high missingness rate, will sometimes fill the variants with very unlikely genotypes, sometimes even completely flipping which one is …
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We have two categorical features that are not booleans, maybe we should apply a onehotencoder.
This has been added to the consolidated notebook.
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Hello, I've been trying to run Minimac4 to impute a cohort of roughly 300,000 individuals. When attempting to impute a single chunk of 5 Mb +/- 1 Mb on chromosome 11, I am routinely encountering a 'S…
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statgenGWAS version 1.0.7
You can reproduce the problem using the same code introduced in the CRAN vignettes:
[Introduction to the statgenGWAS package](https://cran.r-project.org/web/packages/statge…
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In #234 and #209 we created a table of regression coefficients for imputation. That table could use some improvements:
1. It should make use of `pems_clearinghouse_start_date` to determine when to …
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Currently, predict.brmsfit returns an error when predictions are requested for all responses, and the new data contains NAs in variables that were imputed during fitting. A partial solution to this, a…
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Hi There,
I encountered errors when compiling in scr/.
I've fixed the error by replacing the libStatGen in src/ with the latest version (https://github.com/statgen/libStatGen.git). But it took me…
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The current implementation of [removeIndigenousBiologicalMeat](https://github.com/SWS-Methodology/faoswsProcessing/blob/9c35d91bc5389516ee6acfe0f07d73973284ef9b/R/removeIndigenousBiologicalMeat.R#L15)…