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The max relative abundance for samples are 1, but when I plot bar plot for case vs control is greater than one. What do you suggest?
physeq11 = transform_sample_counts(physeq1 , function(OTU) OTU/su…
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Hi All,
I'm trying to estimate beta diversity on water samples that were taken weekly over an entire year. I've plotted PCoA and NMDS plots and have run adonis tests for my variables: Season, MonthSa…
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Hello there!
I'm creating some Jupyter Notebooks for MGnify team to show examples of how to use the tool and I learned that the tool is filtering out samples during the phyloseq object building step.…
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This is a copycat of [the crowdsource polling for a DADA2 logo](https://github.com/benjjneb/dada2/issues/352) that has generated some awesome suggestions and prototypes.
Would love to see user sugg…
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Hello!
Thank you for creating this helpful tool; it has been truly beneficial.
I would like to confirm if it's expected for my phyloseq object to contain all zeros in the OTU table. I am certain t…
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`mStat_generate_report_single()` fails due invalid call to `linda()` in `MicrobiomeStat_1.1.3`:
```
processing file: file10828c3bf4e.Rmd
|........................ | 78% [taxa-test-execut…
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SingleM version 0.18.0
database S4.3.0.GTDB_r220.metapackage_20240523.smpkg.zb
error：
Traceback (most recent call last):
File "/singlem/bin/singlem", line 709, in
singlem.pipe.SearchPipe()…
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Here is a screenshot of what the "Quick Results" would look like for a specimen search. We envisioned this in table format, but this may not be phone/tablet compatible. So, I could also see the inform…
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The common name "Holarctic Springfly" did not transfer for this species. Is there a wider issue?
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Comparative Studies of the Gut Microbiota in the Offspring of Mothers With and Without Gestational Diabetes - Mie Korslund Wiinblad Crusell – Front Cell Infect Microbiol.
https://www.frontiersin.or…