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Hi,
with the re-run of make imports/xxx.owl, we are now having issues with **logic inconsistencies**. See e.g. https://travis-ci.org/obophenotype/human-phenotype-ontology/jobs/232460614 or http://b…
drseb updated
7 years ago
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From R24 "We will develop algorithms that will weight feature frequencies and negative annotations using our Bayesian ontology-querying framework89, which we will extend from a purely HPO-based algori…
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Currently when creating a GDM, a disease can only be identified by an Orphanet ID. This needs to be opened up to include DO, NCIT and OMIM IDs, and when none of these IDs are available then the curato…
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From Tuesday's discussion - the plan is, using topic/postcomposing branches, to load demo post-composed data in the fixture. The demo data doesn't need to be complicated, terms to compose can come fro…
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https://code.google.com/archive/p/phenotype-ontologies/
need to point at the github site(s)
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hp-edit.owl brings in external ontologies like CL, GO, Uberon, NCIT to use in logical definitions.
The pattern is always something like
HP = has-part some Q and inheres-in some X ...
neve…
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We should think about how best to organize the category list so that users can more easily see what is available to them.
One idea is a top-level list like this (alphabetized):
Alleles and Variations
…
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Sometimes Jannovar is unable to annotate a variant and throws an exception. This is caught by Exomiser, but the variant is not included in the analysis or results which could lead to incorrect results…
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i have a created template, which I saved in my folder, but I can't generate an instance from it (Populate is grayed out).
Instance is https://cedar.metadatacenter.net/dashboard?folderId=https:%2F%2F…
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In my software I programmatically retrieve HP via passing the IRI to OWL API (`http://purl.obolibrary.org/obo/hp.owl`). Fairly frequently my script fails with a loading error for HP. This doesn't real…